pml2csv.cpp File Reference

#include <iostream>
#include <string>
#include <PhysicalModel.h>
#include <MultiComponent.h>
#include <StructuralComponent.h>
#include <Atom.h>
#include <math.h>
#include <limits.h>
#include <map>

Include dependency graph for pml2csv.cpp:

Classes
class	ProgramArg
	TODO Comment class here. More...

Functions
ProgramArg	argVal (defaultsArg, sizeof defaultsArg/sizeof *defaultsArg)
bool	isIn (StructuralComponent *sc, Atom *a)
int	main (int argc, char **argv)
void	printArg ()
void	processArg ()

Variables
string	defaultsArg [][2]
string	filename
string	output
string	selected
char	separator
const char *	usage

Function Documentation

ProgramArg argVal	(	defaultsArg	,
		sizeof defaultsArg/sizeof *	defaultsArg
	)

Referenced by main(), and processArg().

bool isIn	(	StructuralComponent *	sc,
		Atom *	a
	)

References StructuralComponent::getStructure().

int main	(	int	argc,
		char **	argv
	)

References StructuralComponent::addStructureIfNotIn(), argVal(), c, StructuralComponent::CELLS, filename, PhysicalModel::getAtoms(), StructuralComponent::getCell(), PhysicalModel::getComponentByName(), Structure::getIndex(), StructuralComponent::getNumberOfStructures(), Atom::getPosition(), StructuralComponent::getStructure(), PhysicalModel::getStructureByName(), Structure::isInstanceOf(), output, outputFile, ProgramArg::parse(), pm, printArg(), processArg(), selected, separator, usage, and PMLAbortException::what().

void printArg

(

)

References filename, output, selected, and separator.

Referenced by main().

void processArg

(

)

References argVal(), filename, output, selected, separator, and usage.

Referenced by main().

Variable Documentation

string defaultsArg[][2]

Initial value:

= {
    { "-f", "" },
    { "-select", "" },
    { "-o", ""},
    { "-d", "comma"},
}

string filename

Referenced by ActionStateMachine::ActionStateMachine(), SaveAsAction::apply(), camitk_parse_test_validate(), ActionStateMachine::checkSCXMLFile(), RawImageComponent::createComponent(), SofaSimulator::createPml(), elementsToNeighborhood(), VolumeRenderingWidget::load(), main(), optimizeMesh(), printArg(), processArg(), MoveFrame::save(), VolumeRenderingWidget::save(), ItkImageComponentExtension::saveImage(), camitk::InteractiveViewer::screenshot(), VolumeRenderingWidget::updateImage(), and vtk2pml().

string output

Referenced by camitk_extension(), camitk_library(), main(), printArg(), and processArg().

string selected

Referenced by camitk::ActionViewer::embedActionWidget(), camitk::InteractiveViewer::initActions(), main(), camitk::SettingsDialog::on_objectList_itemSelectionChanged(), PMManagerDCPopup::PMManagerDCPopup(), printArg(), processArg(), camitk::Explorer::refresh(), camitk::Explorer::rightButtonPressed(), and camitk::ActionViewer::updateActionViewer().

char separator

Referenced by main(), printArg(), MergeMeshs::printKToFile(), processArg(), and PickedPixelMap::savePixelList().

const char* usage

Initial value:

= "usage:\n"
                    "pml2csv -f=file.pml [-select=name] [-o=output.csv] [-d=space]\n"
                    "(Note no space around '=')\n"
                    "Where the flags can be any of: \n"
                    "-f the input pml document\n"
                    "-select the name of the structural component or cell to export as csv\n"
                    "        (default = all atoms)\n"
                    "-o name of the csv output file (default=file.csv)\n"
                    "-d demiter can be either 'space' or 'comma' (default is 'comma')\n"

Referenced by main(), and processArg().